Software Technology

• Programming languages

  • Python

  • R

  • A low-level language, e.g., Cython and/or Rcpp

• Source control

  • GitHub

• Deep Learning and Machine Learning

  • PyTorch and Tensorflow

  • Scikit-Learn

  • Our library: AMBER

• Data exploration and visualization

  • Python: IPython/Jupyter

  • DE for R: Rstudio

  • Addtional for Python: pandas, seaborn, plotly

  • Additional for R: tidyverse, Shiny

• Deployment

  • docker

  • AWS

  • Google Colab

TBD:

• Web development

  • Backend

    • Framework: Django

    • REST API: Django REST Framework

    • Database:

      • MySQL

      • Neo4j

    • Search

      • elasticsearch

      • solr

      • Haystack

  • Frontend

    • Vizualization

      • D3.js

      • sigmajs

    • Javascript UI Framework: React

    • Bootstrap