🧭
LabWiki
  • 📚Zhang Lab Wikipedia
  • Hours and Expectations
  • Lab Resource
  • Publisher & Conference
  • Travel Policy
  • Handbook
    • Paper writing
    • General Coding
    • HPC Usage
      • Conda/Mamba
      • Jupyter Notebook
      • VS Code remote setup
      • Vim setup
      • Tmux/GNU Screen
    • Virtual Machine Setup
    • CS-VPN Setup
    • Software Technology
    • Machine Learning
      • XAI
    • High-throughput Seq
    • Journal Club
      • Introduction about Journal
Powered by GitBook
On this page

Was this helpful?

Edit on GitHub
  1. Handbook

Software Technology

  • Programming languages

    • Python

    • R

    • A low-level language, e.g., Cython and/or Rcpp

  • Source control

    • GitHub

  • Deep Learning and Machine Learning

    • PyTorch and Tensorflow

    • Scikit-Learn

    • Our library: AMBER

  • Data exploration and visualization

    • Python: IPython/Jupyter

    • DE for R: Rstudio

    • Addtional for Python: pandas, seaborn, plotly

    • Additional for R: tidyverse, Shiny

  • Deployment

    • docker

    • AWS

    • Google Colab

TBD:

  • Web development

    • Backend

      • Framework: Django

      • REST API: Django REST Framework

      • Database:

        • MySQL

        • Neo4j

      • Search

        • elasticsearch

        • solr

        • Haystack

    • Frontend

      • Vizualization

        • D3.js

        • sigmajs

      • Javascript UI Framework: React

      • Bootstrap

PreviousCS-VPN SetupNextMachine Learning

Last updated 1 year ago

Was this helpful?